1-Deoxy-D-Xylulose-5-Phosphate Reductoisomerase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 1-Deoxy-D-Xylulose-5-Phosphate Reductoisomerase
  Conformer 1
(PDB)
1k5h (A)
  Conformer 2
(PDB)
1k5h (B)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 360 0.74   4 - 187   217 - 393
2 25 7.43   188 - 216

Sequence


           ________________________________________________________________________________________________________________________ 
 1k5h(A) : MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVEQCLEFSPRYAVMDDEASAKLLKTMLQQQGSRTEVLSGQQAACDMAALEDVDQVMAAIVGAAGLLPTLAAIRAGKTI 
         :                                                                                                                          
 1k5h(B) : MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVEQCLEFSPRYAVMDDEASAKLLKTMLQQQGSRTEVLSGQQAACDMAALEDVDQVMAAIVGAAGLLPTLAAIRAGKTI 
           ________________________________________________________________________________________________________________________ 

           _______________________________________________________________186_______________________216____________________________ 
 1k5h(A) : LLANKESLVTCGRLFMDAVKQSKAQLLPVDSEHNAIFQSLPQPIQHNLGYADLEQNGVVSILLTGSGGPFRETPLRDLATMTPDQACRHPNWSMGRKISVDSATMMNKGLEYIEARWLFN 
         :                                                                                                                          
 1k5h(B) : LLANKESLVTCGRLFMDAVKQSKAQLLPVDSEHNAIFQSLPQPIQHNLGYADLEQNGVVSILLTGSGGPFRETPLRDLATMTPDQACRHPN----rKISVDSATMMNKGLEYIEARWLFN 
           _______________________________________________________________186_______________________216____________________________ 

           ________________________________________________________________________________________________________________________ 
 1k5h(A) : ASASQMEVLIHPQSVIHSMVRYQDGSVLAQLGEPDMRTPIAHTMAWPNRVNSGVKPLDFCKLSALTFAAPDYDRYPCLKLAMEAFEQGQAATTALNAANEITVAAFLAQQIRFTDIAALN 
         :                                                                                                                          
 1k5h(B) : ASASQMEVLIHPQSVIHSMVRYQDGSVLAQLGEPDMRTPIAHTMAWPNRVNSGVKPLDFCKLSALTFAAPDYDRYPCLKLAMEAFEQGQAATTALNAANEITVAAFLAQQIRFTDIAALN 
           ________________________________________________________________________________________________________________________ 

           ______________________________________                                                                                   
 1k5h(A) : LSVLEKMDMREPQCVDDVLSVDANAREVARKEVMRLAS                                                                                   
         :                                                                                                                          
 1k5h(B) : LSVLEKMD-rEPQCVDDVLSVDANAREVARKEVMRL**                                                                                   
           ______________________________________                                                                                   

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
107.2
Translation
(A)
11.9
Closure
(%)
99.9
Bending Residues
( green )
  186 - 188
  216 - 219
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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