DNA Helicase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name DNA Helicase
  Conformer 1
(PDB) 		1e0j (A)
  Conformer 2
(PDB) 		1e0j (D)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 258 0.03   288 - 545
2 21 1.31   265 - 287

Sequence


           _____________________286________________________________________________________________________________________________ 
 1e0j(A) : IPDGVVSALSLRERIREHLSSsVGLLFSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQWF 
         :                                                                                                                          
 1e0j(D) : IPDGVVSALSLRERIREHLSSsVGLLFSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQWF 
           _____________________286________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1e0j(A) : DELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIAL 
         :                                                                                                                          
 1e0j(D) : DELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIAL 
           ________________________________________________________________________________________________________________________ 

           _______________________________________________                                                                          
 1e0j(A) : ERNQQGDMPNLVLVRILKCRFTGDTGIAGYMEYNKETGWLEPSSYSG                                                                          
         :                                                                                                                          
 1e0j(D) : ERNQQGDMPNLVLVRILKCRFTGDTGIAGYMEYNKETGWLEPSSYSG                                                                          
           _______________________________________________                                                                          

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		19.6
Translation
(A) 		-0.1
Closure
(%) 		84.4
Bending Residues
( green ) 		  566 - 567
  692 - 693
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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