D-3-Phosphoglycerate Dehydrogenase (Phosphoglycerate 3 Dehydrogenase) (E.C.1.1.1.95)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name D-3-Phosphoglycerate Dehydrogenase (Phosphoglycerate 3 Dehydrogenase) (E.C.1.1.1.95)
  Conformer 1
(PDB)
1psd (A)
  Conformer 2
(PDB)
1sc6 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 203 0.89   9 - 104   296 - 297   301 - 408
2 170 0.99   105 - 295   298 - 300

Sequence


           _____________________________________________________________________________________________102________________________ 
 1psd(A) : EKDKIKFLLVEGVHQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRG 
         :                                                                                                                          
 1sc6(B) : EKDKIKFLLVEGVHQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRG 
           _____________________________________________________________________________________________102________________________ 

           ________________________________________________________________________________________________________________________ 
 1psd(A) : VPEANAKAHRGVWNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDI 
         :                                                                                                                          
 1sc6(B) : VPEANAKAHRGVGN-----sFEARGKKLGIIGYGHIGTQLGILAESLG-yVYFYDIENKLPLGNATQVQHLSDLLN-sDVVSLHVPENPSTKN--gAKEISL-kPGSLLINASRGTVVDI 
           ________________________________________________________________________________________________________________________ 

           __________________________________________291___________________________________________________________________________ 
 1psd(A) : PALCDALASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTLSAVNFPEVSLPLHGGRRLMHIHENRPGVLTALNKIFAEQGVNIA 
         :                                                                                                                          
 1sc6(B) : PALADALASKHLAGAAID--------------sPLAEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTLSAVNFPEVSLPLHGGRRL-hIHENRPGVLTALNKIFAEQGVNIA 
           __________________________________________291___________________________________________________________________________ 

           ____________________________________________                                                                             
 1psd(A) : AQYLQTSAQMGYVVIDIEADEDVAEKALQAMKAIPGTIRARLLY                                                                             
         :                                                                                                                          
 1sc6(B) : AQYLQTSAQ-gYVVIDIEADEDVAEKALQA-kAIPGTIRARLLY                                                                             
           ____________________________________________                                                                             

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
44.3
Translation
(A)
-1.1
Closure
(%)
53.9
Bending Residues
( green )
  102 - 107
  291 - 301
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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