D-3-Phosphoglycerate Dehydrogenase (Phosphoglycerate 3 Dehydrogenase) (E.C.1.1.1.95)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name D-3-Phosphoglycerate Dehydrogenase (Phosphoglycerate 3 Dehydrogenase) (E.C.1.1.1.95)
  Conformer 1
(PDB)
1sc6 (B)
  Conformer 2
(PDB)
1sc6 (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 206 0.64   9 - 106   298 - 408
2 162 0.67   107 - 297

Sequence


           _________________________________________________________________________________________________106____________________ 
 1sc6(B) : EKDKIKFLLVEGVHQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRG 
         :                                                                                                                          
 1sc6(D) : EKDKIKFLLVEGVHQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRG 
           _________________________________________________________________________________________________106____________________ 

           ________________________________________________________________________________________________________________________ 
 1sc6(B) : VPEANAKAHRGVGNsFEARGKKLGIIGYGHIGTQLGILAESLGyVYFYDIENKLPLGNATQVQHLSDLLNsDVVSLHVPENPSTKNgAKEISLkPGSLLINASRGTVVDIPALADALASK 
         :                                                                                                                          
 1sc6(D) : VPEANAKAHRGVG-sFEARGKKLGIIGYGHIGTQLGILAESLGyVYFYDIENKLPLGNATQVQHLSDLLNsDVVSLHVPENPSTKNgAKEISLkPGSLLINASRGTVVDIPALADALASK 
           ________________________________________________________________________________________________________________________ 

           ______________________291_______________________________________________________________________________________________ 
 1sc6(B) : HLAGAAID----sPLAEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTLSAVNFPEVSLPLHGGRRLhIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQgYVVIDIEADED 
         :                                                                                                                          
 1sc6(D) : HLAGAAIDVpFTSPLAEFDNVLLTP----sTQEAQENIGLEVAGKLIKYSDNGSTLSAVNFPEVSLPLHGGRRLhIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQgYVVIDIEADED 
           ______________________291_______________________________________________________________________________________________ 

           _____________________                                                                                                    
 1sc6(B) : VAEKALQAkAIPGTIRARLLY                                                                                                    
         :                                                                                                                          
 1sc6(D) : VAEKALQAkAIPGTIRARLLY                                                                                                    
           _____________________                                                                                                    

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
16.5
Translation
(A)
-0.2
Closure
(%)
93.9
Bending Residues
( green )
  106 - 109
  291 - 300
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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