Early Endosomal Autoantigen 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Early Endosomal Autoantigen 1
  Conformer 1
(PDB)
1joc (B)
  Conformer 2
(PDB)
1joc (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 72 0.66   1336 - 1336   1339 - 1409
2 47 0.66   1291 - 1335   1337 - 1338

Sequence


           ___________________________________________1335_________________________________________________________________________ 
 1joc(B) : QDERRALLERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQIKHTQALNRKWAEDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNALTPSSKKPVRVCDACFND 
         :                                                                                                                          
 1joc(A) : QDERRALLERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQIKHTQALNRKWAEDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNALTPSSKKPVRVCDACFND 
           ___________________________________________1335_________________________________________________________________________ 

           ___                                                                                                                      
 1joc(B) : LQG                                                                                                                      
         :                                                                                                                          
 1joc(A) : LQG                                                                                                                      
           ___                                                                                                                      

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
21.2
Translation
(A)
0.4
Closure
(%)
98.7
Bending Residues
( green )
  1335 - 1341
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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