Endoplasmin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Endoplasmin
  Conformer 1
(PDB)
1tc6 (A)
  Conformer 2
(PDB)
1qye (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 163 0.69   96 - 163   200 - 335
2 24 2.53   171 - 194

Sequence


           ________________________________________________________________________________________162_____________________________ 
 1tc6(A) : ****FAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSEL 
         :                                                                                                                          
 1qye(A) : KSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSEL 
           ________________________________________________________________________________________162_____________________________ 

           194_______________________________________________________________________________________________________               
 1tc6(A) : IGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKTgKTVWDWELMN               
         :                                                                                                                          
 1qye(A) : IGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKT-kTVWDWELMN               
           194_______________________________________________________________________________________________________               

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
62.7
Translation
(A)
-11.7
Closure
(%)
52.0
Bending Residues
( green )
  162 - 171
  194 - 200
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download