Gdp-D-Mannose-4,6-Dehydratase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Gdp-D-Mannose-4,6-Dehydratase
  Conformer 1
(PDB)
1n7g (D)
  Conformer 2
(PDB)
1n7h (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 242 0.58   30 - 224   242 - 253   255 - 281   319 - 339
2 67 0.47   225 - 241   254 - 254   282 - 309   340 - 360

Sequence


           ________________________________________________________________________________________________________________________ 
 1n7g(D) : RKIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYI--lMKLHYADLTDASSLRRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGR 
         :                                                                                                                          
 1n7h(B) : RKIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIkALMKLHYADLTDASSLRRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGR 
           ________________________________________________________________________________________________________________________ 

           ____________________________________________________________________224______________241________________________________ 
 1n7g(D) : TVKYYQAGSSEMFGSTPPPQSETTPFHPRSPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLF-----aSRDWGFAGDYVEAMWLMLQQEK 
         :                                                                                                                          
 1n7h(B) : TVKYYQAGSSEMFGSTPPPQSETTPFHPRSPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFLGNLQASRDWGFAGDYVEAMWLMLQQEK 
           ____________________________________________________________________224______________241________________________________ 

           _____281_____________________305__________________________334_________________________________                           
 1n7g(D) : PDDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEID---------dNLQGDASKAKEVLGWKPQVGFEKLVKMMVDEDLELAKREKVLV*****                           
         :                                                                                                                          
 1n7h(B) : PDDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRYFRPAEVDNLQGDASKAKEVLGWKPQVGFEKLVKMMVDEDLELAKREKVLVDAGYM                           
           _____281_____________________305__________________________334_________________________________                           

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
10.0
Translation
(A)
0.3
Closure
(%)
90.0
Bending Residues
( green )
  224 - 225
  241 - 257
  281 - 282
  305 - 326
  334 - 340
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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