Genome Polyprotein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Genome Polyprotein
  Conformer 1
(PDB)
1xr7 (B)
  Conformer 2
(PDB)
1tp7 (A)
  Window Length 15
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 337 0.8   8 - 20   22 - 22   55 - 55   62 - 391
2 99 0.44   21 - 21   23 - 54   56 - 61   392 - 453

Sequence


           _______8___________________________________________53___________________________________________________________________ 
 1xr7(B) : GQIQISKHVKDVGLPSIHTPTKTKLQPSVFYDIFPGSKEPAVLTEKDPRLKVDFDSALFSKYKGNTECSLNEHIQVAVAHYSAQLATLDIDPQPIAMEDSVFGMDGLEALDLNTSAGYPY 
         :                                                                                                                          
 1tp7(A) : GQIQISKHVKDVGLPSIHTPTKTKLQPSVFYDIFPGSKEPAVLTEKDPRLKVDFDSALFSKYKGNTECSLNEHIQVAVAHYSAQLATLDIDPQPIA-eDSVFG-dGLEALDLNTSAGYPY 
           _______8___________________________________________53___________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1xr7(B) : VTLGIKKKDLINNKTKDISKLKLALDKYGVDLPMITFLKDELRKKDKIAAGKTRVIEASSINDTILFRTVYGNLFSKFHLNPGVVTGCAVGCDPETFWSKIPLMLDGDCIMAFDYTNYDG 
         :                                                                                                                          
 1tp7(A) : VTLGIKKKDLINNKTKDISKLKLALDKYDVDLP-iTFLKDELRKKDKIAAGKTRVIEASSINDTILFRTVYGNLFSKFHLNPGVVTGCAVGCDPETFWSKIPL-lDGDCI-aFDYTNYDG 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1xr7(B) : SIHPIWFKALGMVLDNLSFNPTLINRLCNSKHIFKSTYYEVEGGVPSGCSGTSIFNSMINNIIIRTLVLDAYKHIDLDKLKIIAYGDDVIFSYKYKLDMEAIAKEGQKYGLTITPADKSS 
         :                                                                                                                          
 1tp7(A) : SIHPIWFKALG-vLDNLSFNPTLINRLCNSKHIFKSTYYEVEGGVPSGCSGTSIFNS-iNNIIIRTLVLDAYKHIDLDKLKIIAYGDDVIFSYKYKLD-eAIAKEGQKYGLTITPADKSS 
           ________________________________________________________________________________________________________________________ 

           ____________________________391_____________________________________________________________________                     
 1xr7(B) : EFKELDYGNVTFLKRGFRQDDKYKFLIHPTFPVEEIYESIRWTKKPSQMQEHVLSLCHLMWHNGPEIYKDFETKIRSVSAGRALYIPPYELLRHEWYEKF                     
         :                                                                                                                          
 1tp7(A) : EFKELDYGNVTFLKRGFRQDDKYKFLIHPTFPVEEIYESIRWTKKPSQ-qEHVLSLCHL-wHNGPEIYKDFETKIRSVSAGRALYIPPYELLRHEWYEKF                     
           ____________________________391_____________________________________________________________________                     

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
5.2
Translation
(A)
0.1
Closure
(%)
4.2
Bending Residues
( green )
  8 - 24
  53 - 62
  391 - 393
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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