Glucose-1-Phosphate Cytidylyltransferase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glucose-1-Phosphate Cytidylyltransferase
  Conformer 1
(PDB)
1wvc (A)
  Conformer 2
(PDB)
1tzf (A)
  Window Length 11
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 161 0.42   7 - 7   27 - 56   93 - 157   190 - 254
2 46 1.59   9 - 26   57 - 92

Sequence


           ______7_________________26____________________________56_________________________________91_____________________________ 
 1wvc(A) : *ASKAVILAGGLGTRLSEETIVKPKPMVEIGGKPILWHIMKMYSVHGIKDFIICCGYKGYVIKEYFANYFLHMSDVTFHMAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVK 
         :                                                                                                                          
 1tzf(A) : MASKAVILAGGLG--------vKPKPMVEIGGKPILWHIMKMYSVHGIKDFIICCGYKGYVIKEYFANYFLHMSDVTFHMAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVK 
           ______7_________________26____________________________56_________________________________91_____________________________ 

           ________________________________________________________________________________________________________________________ 
 1wvc(A) : DDEAFLFTYGDGVADLDIKATIDFHKAHGKKATLTATFPPGR-gALDIQAGQVRSFQ---kGDGAMINGGFFVLNPSVIDLIDNDATTWEQEPLMTLAQQGELMAFEHPGFWQPMDTLRD 
         :                                                                                                                          
 1tzf(A) : DDEAFLFTYGDGVADLDIKATIDFHKAHGKKATLTATFPPGRFGALDIQAGQVRSFQEKPKGDGAMINGGFFVLNPSVIDLIDNDATTWEQEPLMTLAQQGELMAFEHPGFWQPMDTLRD 
           ________________________________________________________________________________________________________________________ 

           ___________________                                                                                                      
 1wvc(A) : KVYLEGLWEKGKAPWKTWE                                                                                                      
         :                                                                                                                          
 1tzf(A) : KVYLEGLWEKGKAPWKTWE                                                                                                      
           ___________________                                                                                                      

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
13.7
Translation
(A)
0.5
Closure
(%)
66.0
Bending Residues
( green )
  7 - 9
  26 - 31
  56 - 57
  91 - 97
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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