Glutamate Dehydrogenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamate Dehydrogenase
  Conformer 1
(PDB)
1hwx (C)
  Conformer 2
(PDB)
1nr1 (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 281 1.97   18 - 207   381 - 453   482 - 499
2 211 1.55   8 - 17   208 - 380   454 - 481

Sequence


           _______________17_______________________________________________________________________________________________________ 
 1hwx(C) : ADREDDPNFFKMVEGFFDRGASIVEDKLVEDLKTRQTQEQKRNRVRGILRIIKPCNHVLSLSFPIRRDDGSWEVIEGYRAQHSHQRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDV 
         :                                                                                                                          
 1nr1(C) : *****DPNFFKMVEGFFDRGASIVEDKLVEDLRTRESEEQKRNRVRGILRIIKPCNHVLSLSFPIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDV 
           _______________21_______________________________________________________________________________________________________ 

           ____________________________________________________________________________________207_________________________________ 
 1hwx(C) : PFGGAKAGVKINPKNYTDEDLEKITRRFTMELAKKGFIGPGVDVPAPNMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFIENASYMSILGMTP 
         :                                                                                                                          
 1nr1(C) : PFGGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGIDVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTP 
           ____________________________________________________________________________________211_________________________________ 

           ________________________________________________________________________________________________________________________ 
 1hwx(C) : GFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPQADKIF 
         :                                                                                                                          
 1nr1(C) : GFGDKTFVVQGFGNVGLHSMRYLHRFGAKCIAVGESDGSIWNPDGIDPKELEDFKLQHGSILGFPKAKPYEGSILEADCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIF 
           ________________________________________________________________________________________________________________________ 

           _________________380______________________________________________________________________453_________________________48 
 1hwx(C) : LERNIMVIPDLYLNAGGVTVSYFQILKNLNHVSYGRLTFKYERDSNYHLLMSVQESLERKFGKHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMRTAMKYNLGLDLRTA 
         :                                                                                                                          
 1nr1(C) : LERNIMVIPDLYLNAGGVTVSYFEWLKNLNHVSYGRLTFKYERDSNYHLLMSVQESLERKFGKHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMEASARQIMRTAMKYNLGLDLRTA 
           _________________384______________________________________________________________________457_________________________48 

           1____________________                                                                                                    
 1hwx(C) : AYVNAIEKVFRVYNEAGVTFT                                                                                                    
         :                                                                                                                          
 1nr1(C) : AYVNAIEKVFKVYNEAGVTFT                                                                                                    
           5____________________                                                                                                    

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
20.0
Translation
(A)
-0.1
Closure
(%)
73.9
Bending Residues
( green )
  17 - 18
  207 - 208
  380 - 381
  453 - 454
  481 - 482
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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