Glycerol-3-Phosphate Dehydrogenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glycerol-3-Phosphate Dehydrogenase
  Conformer 1
(PDB)
1n1e (A)
  Conformer 2
(PDB)
1evy (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 244 0.67   11 - 209   232 - 236   243 - 268   309 - 318   351 - 354
2 97 0.87   210 - 231   237 - 242   269 - 308   319 - 350

Sequence


           ________________________________________________________________________________________________________________________ 
 1n1e(A) : KDELLYLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIE 
         :                                                                                                                          
 1evy(A) : KDELLYLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIE 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________________________________________209___________________231__236___242______ 
 1n1e(A) : RSTLKFPAEIIGEFLPSPLLSVLAGPSFAIEVATGVFTCVSIASADINVARRLQRIMSTGDRSFVCWATTDTVGCEVASAVKNVLAIGSGVANGLGMGLNARAALIMRGLLEIRDLTAAL 
         :                                                                                                                          
 1evy(A) : RSTLKFPAEIIGEFLPSPLLSVLAGPSFAIEVATGVFTCVSIASADINVARRLQRIMSTGDRSFVCWATTDTVGCEVASAVKNVLAIGSGVANGLGMGLNARAALIMRGLLEIRDLTAAL 
           ______________________________________________________________________________209___________________231__236___242______ 

           _________________268_____________________________________308_______318_____________________________350_______            
 1n1e(A) : GGDGSAVFGLAGLGDLQLTCSSELSRNFTVGKKLGKGLPIEEIQRTSKAVAEGVATADPLMRLAKQLKVKMPLCHQIYEIVYKKKNPRDALADLLSCGLQDEGLPPLFK            
         :                                                                                                                          
 1evy(A) : GGDGSAVFGLAGLGDLQLTCSSELSRNFTVGKKLGKGLPIEEIQR---aVAEGVATADPLMRLAKQLKVKMPLCHQIYEIVYKKKNPRDALADLLSCGLQDEGLPPLFK            
           _________________268_____________________________________308_______318_____________________________350_______            

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
10.5
Translation
(A)
0.0
Closure
(%)
99.8
Bending Residues
( green )
  209 - 210
  231 - 232
  236 - 237
  242 - 243
  268 - 269
  308 - 309
  318 - 319
  350 - 353
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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