Gna33

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Gna33
  Conformer 1
(PDB)
2g6g (A)
  Conformer 2
(PDB)
2g5d (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 192 0.38   42 - 142   345 - 439
2 178 0.94   143 - 344

Sequence


           ____________________________________________________________________________________________________________142_________ 
 2g6g(A) : PDTSVINGPDRPAGIPDPAGTTVAGGGAVYTVVPHLS-pHWAAQDFAKSLQSFRLGCANLKNRQGWQDVCAQAFQTPIHSFQAKRFFERYFTPWQVAGNGSLAGTVTGYYEPVLKGDGRR 
         :                                                                                                                          
 2g5d(A) : ********PDRPAGIPDPAGTTVAGGGAVYTVVPHLSMPHWAAQDFAKSLQSFRLGCANLKNRQGWQDVCAQAFQTPIHSFQAKRFFERYFTPWQVAGNGSLAGTVTGYYEPVLKGDGRR 
           ____________________________________________________________________________________________________________142_________ 

           ________________________________________________________________________________________________________________________ 
 2g6g(A) : TERARFPIYGIPDDFISVPLPAGLRGGKNLVRIRQTGKNSGTIDNAGGTHTADLSRFPITARTTAIKGRFEGSRFLPYHTRNQINGGALDGKAPILGYAEDPVELFF-hIQGSGRLKTPS 
         :                                                                                                                          
 2g5d(A) : TERARFPIYGIPDDFISVPLP--------lVRIRQTGKNSGt-------HTADLSRFPITARTTAIKGRFEGSRFLPYHTRNQINGGALDGKAPILGYAEDPVELFFMHIQGSGRLKTPS 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________________________336_______________________________________________________ 
 2g6g(A) : GKYIRIGYADKNEHPYVSIGRY-aDKGYLKLGQTS-qGIKAY-rQNPQRLAEVLGQNPSYIFFRELdGPVGALGTPL-gEYAGAIDRHYITLGAPLFVATAHPVTRKALNRLI-aQDTGS 
         :                                                                                                                          
 2g5d(A) : GKYIRIGYADKNEHPYVSIGRYMADKGYLKLGQTSMQGIKAYMRQNPQRLAEVLGQNPSYIFFRELdGPVGALGTPLMGEYAGAIDRHYITLGAPLFVATAHPVTRKALNRLIMAQDTGS 
           ______________________________________________________________336_______________________________________________________ 

           _____________________________________________                                                                            
 2g6g(A) : AIKGAVRVDYFWGYGDEAGELAGKQKTTGYVWQLLPNG-kPEYRP                                                                            
         :                                                                                                                          
 2g5d(A) : AIKGAVRVDYFWGYGDEAGELAGKQKTTGYVWQLLPNGMKPEYRP                                                                            
           _____________________________________________                                                                            

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
8.8
Translation
(A)
-0.3
Closure
(%)
46.8
Bending Residues
( green )
  142 - 143
  336 - 345
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download