Gp32 Single Stranded DNA Binding Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Gp32 Single Stranded DNA Binding Protein
  Conformer 1
(PDB)
2a1k (B)
  Conformer 2
(PDB)
1gpc  
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 171 1.13   33 - 146   167 - 179   192 - 235
2 32 1.74   147 - 166   180 - 191

Sequence


           ________________________________________________________________________________________________________________________ 
 2a1k(B) : *******GEWKLKLDASGNGQAVIRFLPAKTDDALPFAILVNHGFKKNGKWYIETCSSTHGDYDSCPVCQYISKNDLYNTNKTEYSQLKRKTSYWANILVVKDPQAPDNEGKVFKYRFGK 
         :                                                                                                                          
 1gpc    : GFSSEDKGEWKLKLDNAGNGQAVIRFLPSKNDEQAPFAILVNHGFKKNGKWYIETCSSTHGDYDSCPVCQYISKNDLYNTDNKEYSLVKRKTSYWANILVVKDPAAPENEGKVFKYRFGK 
           ________________________________________________________________________________________________________________________ 

           __146_________________166__________179_________191_________________________________________________                      
 2a1k(B) : KIWDKINAMIAVDTEMGETPVDVTCPWEGANFVLKVKQVSGFSNYDESKFLNQSAIPNIDDESFQKELFEQMVDLSEMTSKDKFKSFEELNTKFNQVLG                      
         :                                                                                                                          
 1gpc    : KIWDKINAMIAVDVEMGETPVDVTCPWEGANFVLKVKQVSGFSNYDESKFLNQSAIPNIDDESFQKELFEQMVDLSEMTSKDKFKSFEELNTKFGQVM*                      
           __146_________________166__________179_________191_________________________________________________                      

Morph

Morph animation in progress.
Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
17.5
Translation
(A)
-0.3
Closure
(%)
92.2
Bending Residues
( green )
  146 - 147
  166 - 167
  179 - 180
  191 - 192
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

Download and extract PyMOL PML script file Download