Grancalcin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Grancalcin
  Conformer 1
(PDB)
1f4q (A)
  Conformer 2
(PDB)
1k94 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 94 0.69   55 - 139   166 - 167   170 - 180
2 63 0.93   140 - 165   168 - 169   181 - 215

Sequence


           ______________________________________________________________________________137_____________________________165_______ 
 1f4q(A) : SVYTYFSAVAGQDGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRDHTGKMGFNAFKELWAALNAWKENFMTVD----gTVEHHELRQAIGLMGYRLSPQTLTTIVKRYSKNGR 
         :                                                                                                                          
 1k94(B) : SVYTYFSAVAGQDGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRDHTGKMGFNAFKELWAALNAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRYSKNGR 
           ______________________________________________________________________________437_____________________________465_______ 

           _____180_____________________________________                                                                            
 1f4q(A) : IFFDDYVACCVKLRALTDFFKKRDHLQQGSADFIYDDFLQGTMAI                                                                            
         :                                                                                                                          
 1k94(B) : IFFDDYVACCVKLRALTDFFRKRDHLQQGSANFIYDDFLQGTMAI                                                                            
           _____480_____________________________________                                                                            

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
10.4
Translation
(A)
0.3
Closure
(%)
86.3
Bending Residues
( green )
  137 - 140
  165 - 170
  180 - 181
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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