G/t Mismatch-Specific Thymine DNA Glycosylase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name G/t Mismatch-Specific Thymine DNA Glycosylase
  Conformer 1
(PDB)
1wyw (A)
  Conformer 2
(PDB)
2d07 (A)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 166 0.75   126 - 139   153 - 189   213 - 327
2 35 1.32   124 - 125   140 - 152   190 - 212

Sequence


           __________125___________139__________152__________________________________189____________________212____________________ 
 1wyw(A) : ****AELLTKTLPDILTFNLDIVIIGINPGLMAAYKGHHYPGPGNHFWKCLFMSGLSEVQLNHMDDHTLPGKYGIGFTNMVERTTPGSKDLSSKEFREGGRILVQKLQKYQPRIAVFNGK 
         :                                                                                                                          
 2d07(A) : GVSEAELLTKTLPDILTFNLDIVIIGINPGLMAAYKGHHYPGPGNHFWKCLFMSGLSEVQLNHMDDHTLPGKYGIGFTNMVERTTPG---lSSKEFREGGRILVQKLQKYQPRIAVFNGK 
           __________125___________139__________152__________________________________189____________________212____________________ 

           ____________________________________________________________________________________________________                     
 1wyw(A) : CIYEIFSKEVFGVKVKNLEFGLQPHKIPDTETLCYVMPSSSARCAQFPRAQDKVHYYIKLKDLRDQLKGIERNMDVQEVQYTFDLQLAQEDAKKMAVKEE                     
         :                                                                                                                          
 2d07(A) : CIYEIFSKEVFGVKVKNLEFGLQPHKIPDTETLCYVMPSSSARCAQFPRAQDKVHYYIKLKDLRDQLKGIERNMDVQEVQYTFDLQLAQEDAKKMAVK**                     
           ____________________________________________________________________________________________________                     

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
14.8
Translation
(A)
-0.6
Closure
(%)
75.9
Bending Residues
( green )
  125 - 126
  139 - 140
  152 - 153
  189 - 190
  212 - 213
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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