Gtp Pyrophosphokinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Gtp Pyrophosphokinase
  Conformer 1
(PDB)
2be3 (A)
  Conformer 2
(PDB)
2be3 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 119 0.88   4 - 111   119 - 142
2 23 0.46   112 - 118   143 - 159

Sequence


           _____________________________________________________________________________________________________108_______118______ 
 2be3(A) : TLEWEEFLDPYIQAVGELKIKLRGIRKQYRKQNKHSPIEFVTGRVKPIESIKEKaRRGITYATLEHDLQDIAGLRVvQFVDDVKEVVDILHKRQDrIIQERDYITHRKASGYRSYHVVVE 
         :                                                                                                                          
 2be3(B) : TLEWEEFLDPYIQAVGELKIKLRGIRKQYRKQNKHSPIEFVTGRVKPIESIKEKa----------hDLQDIAGLRVvQFVDDVKEVVDILHKRQDrIIQERDYITHRKASGYRSYHVVVE 
           _____________________________________________________________________________________________________108_______118______ 

           _______________142___________________________________________________________                                            
 2be3(A) : YTVDTINGAKTILAEIQIRTLAnFWATIEHSLNYKYQGDFPDEIKKRLEITARIAHQLDEEgEIRDDIQEAQALFDP                                            
         :                                                                                                                          
 2be3(B) : YTVDTINGAKTILAEIQIRTLAnFWATIEHSLNYKYQ-dFPDEIKKRLEITARIAHQLDEEgEIRDDIQEAQALF**                                            
           _______________142___________________________________________________________                                            

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
10.8
Translation
(A)
-0.3
Closure
(%)
6.7
Bending Residues
( green )
  108 - 112
  118 - 119
  142 - 143
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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