Guanine Nucleotide Exchange Factor Dbs [Fragment]

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Guanine Nucleotide Exchange Factor Dbs [Fragment]
  Conformer 1
(PDB)
1rj2 (G)
  Conformer 2
(PDB)
1rj2 (J)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 188 1.0   626 - 813
2 110 2.14   814 - 948

Sequence


           ________________________________________________________________________________________________________________________ 
 1rj2(G) : EEEESLAILRRHVMNELLDTERAYVEELLCVLEGYAAEMDNPLMAHLISTGLQNKKNILFGNMEEIYHFHNRIFLRELESCIDCPELVGRCFLERMEEFQIYEKYCQNKPRSESLWRQCS 
         :                                                                                                                          
 1rj2(J) : EEEESLAILRRHVMNELLDTERAYVEELLCVLEGYAAEMDNPLMAHLISTGLQNKKNILFGNMEEIYHFHNRIFLRELESCIDCPELVGRCFLERMEEFQIYEKYCQNKPRSESLWRQCS 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________________________805__________________________________________________________ 
 1rj2(G) : DCPFFQECQKKLDHKLSLDSYLLKPVQRITKYQLLLKEMLKYSKHCEGAEDLQEALSSILGILKAVNDSMHLIAITGYDGNLGDLGKLLMQGSFSVWTD--------------kPMQRHL 
         :                                                                                                                          
 1rj2(J) : DCPFFQECQKKLDHKLSLDSYLLKPVQRITKYQLLLKEMLKYSKHCEGAEDLQEALSSILGILKAVNDSMHLIAITGYDGNLGDLGKLLMQGSFSVWTDHKKGHTKVKELARFKPMQRHL 
           ___________________________________________________________805__________________________________________________________ 

           ___________________________________________________________________________________                                      
 1rj2(G) : FLHEKAVLFCKKRyEKAPSYSYKQSLNMTAVGITENVKGDTKKFEIWYNAREEVYIIQAPTPEIKAAWVNEIRKVLTSQLQ**                                      
         :                                                                                                                          
 1rj2(J) : FLHEKAVLFCKKR-----EySYKQSLNMTAVGITENVKGDTKKFEIWYNAREEVYIIQAPTPEIKAAWVNEIRKVLTSQLQAC                                      
           ___________________________________________________________________________________                                      

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
39.1
Translation
(A)
5.2
Closure
(%)
93.1
Bending Residues
( green )
  805 - 814
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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