Haloacid Dehalogenase-Like Hydrolase Domain Containing 2

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Haloacid Dehalogenase-Like Hydrolase Domain Containing 2
  Conformer 1
(PDB)
2ho4 (B)
  Conformer 2
(PDB)
2ho4 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 133 0.59   9 - 45   48 - 71   179 - 257
2 107 0.34   46 - 47   72 - 178

Sequence


           _____________________________________45________________________71_______________________________________________________ 
 2ho4(B) : *LKAVLVDLNGTLHIEDAAVPGAQEALKRLRATSVvRFVTNTTKETKKDLLERLKKLEFEISEDEIFTSLTAARNLIEQKQVRPlLLDDRALPEFTGVQTQDPNAVVIGLAPEHFHYQLL 
         :                                                                                                                          
 2ho4(A) : ALKAVLVDLNGTLHI---aVPGAQEALKRLRATSVvRFVTNTTKETKKDLLERLKKLEFEISEDEIFTSLTAARNLIEQKQVRPlLLDDRALPEFTGVQTQDPNAVVIGLAPEHFHYQLL 
           _____________________________________45________________________71_______________________________________________________ 

           _______________________________________________178______________________________________________________________________ 
 2ho4(B) : NQAFRLLLDGAPLIAIHKARYYKRKDGLALGPGPFVTALEYATDTKAvVGKPEKTFFLEALRDADCAPe-AViGDDCRDDVDGAQNIGlGILVKTGKYKAADEEKINPPPYLTCESFPHA 
         :                                                                                                                          
 2ho4(A) : NQAFRLLLDGAPLIAIHKARYYKRKDGLALGPGPFVTALEYATDTKAvVGKPEKTFFLEALRDADCAPEEAViGDDCRDDVDGAQNIGlGILVKTGKYKAADEEKINPPPYLTCESFPHA 
           _______________________________________________178______________________________________________________________________ 

           _________                                                                                                                
 2ho4(B) : VDHILQHLL                                                                                                                
         :                                                                                                                          
 2ho4(A) : VDHILQHLL                                                                                                                
           _________                                                                                                                

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
10.9
Translation
(A)
0.1
Closure
(%)
81.5
Bending Residues
( green )
  45 - 48
  71 - 77
  178 - 179
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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