Helicase Pcra

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Helicase Pcra
  Conformer 1
(PDB)
2pjr (A)
  Conformer 2
(PDB)
3pjr (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 427 1.89   9 - 227   231 - 252   263 - 284   311 - 312   385 - 546
2 109 0.88   228 - 230   253 - 262   285 - 310   313 - 382

Sequence


           ________________________________________________________________________________________________________________________ 
 2pjr(A) : ***QLLAHLNKEQQEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGGAAEDVWISTFHSMCVRILRRDIDRIGINRNFSILDPTDQLS 
         :                                                                                                                          
 3pjr(A) : LSEQLLAHLNKEQQEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGGAAEDVWISTFHSMCVRILRRDIDRIGINRNFSILDPTDQLS 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________________________________________________________________227________________ 
 2pjr(A) : VMKTILKEKNIDPKKFEPRTILGTISAAKNELLPPEQFAKRASTYYEKVVSDVYQEYQQRLLRNHSLDFDDLIMTTIQLFDRVPDVLHYYQYKFQYIHIDEYQDTNRAQYTLVKKLAERF 
         :                                                                                                                          
 3pjr(A) : VMKTILKEKNIDPKKFEPRTILGTISAAKNELLPPEQFAKRASTYYEKVVSDVYQEYQQRLLRNHSLDFDDLIMTTIQLFDRVPDVLHYYQYKFQYIHIDEYQDTNRAQYTLVKKLAERF 
           _____________________________________________________________________________________________________227________________ 

           ______252_______262___________________284_______________________310_____________________________________________________ 
 2pjr(A) : QNICAVGDADQSIYRWRGADIQNILSFERDYPNAKVILLEQNYRSTKRILQAANEVIEHNVNRKPKRIWTENPEGKPILYYEAMNEADEAQFVAGRIREAVERGERRYRDFAVLYRTNAQ 
         :                                                                                                                          
 3pjr(A) : QNICAVGDADQSIYRWRGADIQNILSFERDYPNAKVILLEQNYRSTKRILQAANEVIEHNVNRKPKRIWTENPEGKPILYYEAMNEADEAQFVAGRIREAVERGERRYRDFAVLYRTNAQ 
           ______252_______262___________________284_______________________310_____________________________________________________ 

           ____________378_________________________________________________________________________________________________________ 
 2pjr(A) : SRVMEEMLLKANIPYQIVGGLKFYDRKEIKDILAYLRVIANPDDDLSLLRIINVPKRGIGASTIDKLVRYAADHELSLFEALGELEMIGLGAKAAGALAAFRSQLEQWTQLQEYVSVTEL 
         :                                                                                                                          
 3pjr(A) : SRVMEEMLLKANIPYQIVGGLKFYDRKEIKDILAYLRVIANPDDDLSLLRIINVPKRGIGASTIDKLVRYAADHELSLFEALGELEMIGLGAKAAGALAAFRSQLEQWTQLQEYVSVTEL 
           ____________378_________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2pjr(A) : VEEVLDKSGYREMLKAERTIEAQSRLENLDEFLSVTKHFENVSDDKSLIAFLTDLALISDLDELD******************************************************* 
         :                                                                                                                          
 3pjr(A) : VEEVLDKSGYREMLKAERTIEAQSRLENLDEFLSVTKHFENVSDDKSLIAFLTDLALISDLDEtEQAAEGDAVMLMTLHAAKGLEFPVVFLIGMEEGIFPHNRSLEDDDEMEEERRLAYV 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________                                                                           
 2pjr(A) : **********************************************                                                                           
         :                                                                                                                          
 3pjr(A) : GITRAEEELVLTSAQMRTLFGNIQMDPPSRFLNEIPAHLLETASRR                                                                           
           ______________________________________________                                                                           

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
12.3
Translation
(A)
-0.7
Closure
(%)
12.6
Bending Residues
( green )
  227 - 228
  230 - 231
  252 - 253
  262 - 263
  284 - 285
  310 - 313
  378 - 389
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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