Heme-Based Methyl-Accepting Chemotaxis Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Heme-Based Methyl-Accepting Chemotaxis Protein
  Conformer 1
(PDB)
1u56 (A)
  Conformer 2
(PDB)
1u55 (B)
  Window Length 13
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 112 1.03   7 - 9   73 - 181
2 63 0.74   10 - 72

Sequence


           ________9_____________________________________________________________72________________________________________________ 
 1u56(A) : MKGTIVGTWIKTLRDLYGNDVVDESLKSVGWEPDRVITPLEDIDDDEVRRIFAKVSEKTGKNVNEIWREVGRQNIKTFSEWFPSYFAGRRLVNFLMMMDEVHLQLTKMIKGATPPRLIAK 
         :                                                                                                                          
 1u55(B) : MKGTIVGTWIKTLRDLYGNDVVDESLKSVGWEPDRVITPLEDIDDDEVRRIFAKVSEKTGKNVNEIWREVGRQNIKTFSEWFPSYFAGRRLVNFLMMMDEVHLQLTKMIKGATPPRLIAK 
           ________9_____________________________________________________________72________________________________________________ 

           ____________________________________________________________________                                                     
 1u56(A) : PVAKDAIEMEYVSKRKMYDYFLGLIEGSSKFFKEEISVEEVERGEKDGFSRLKVRIKFKNPVFEYKKN                                                     
         :                                                                                                                          
 1u55(B) : PVAKDAIEMEYVSKRKMYDYFLGLIEGSSKFFKEEISVEEVERGEKDGFSRLKVRIKFKNPVFEYKK*                                                     
           ____________________________________________________________________                                                     

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
11.3
Translation
(A)
0.5
Closure
(%)
75.5
Bending Residues
( green )
  9 - 11
  72 - 73
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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