Hemoglobin Delta Chain

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Hemoglobin Delta Chain
  Conformer 1
(PDB)
1si4 (D)
  Conformer 2
(PDB)
1uiw (D)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 65 0.73   17 - 65   113 - 113   115 - 129
2 53 0.68   9 - 16   83 - 112   114 - 114   130 - 143

Sequence


           ______________16_______________________________________________65____________________________________________112________ 
 1si4(D) : VHLTPEEKTAVNALWGKVNVDAVGGEALGRLLVVYPWTQRFFESFGDLSSPDAVMGNPKVKAHGKKVLGAFSDGLAHLDNLKGTFSQLSELHCDKLHVDPENFRLLGNVLVCVLARNFGK 
         :                                                                                                                          
 1uiw(D) : VHLTPEEKSAVTALWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSTPDAVMGNPKVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFRLLGNVLVCVLAHHFGK 
           ______________16_______________________________________________65____________________________________________112________ 

           ______129_________________                                                                                               
 1si4(D) : EFTPQMQAAYQKVVAGVANALAHKYH                                                                                               
         :                                                                                                                          
 1uiw(D) : EFTPPVQAAYQKVVAGVANALAHKYH                                                                                               
           ______129_________________                                                                                               

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
6.6
Translation
(A)
-0.2
Closure
(%)
21.8
Bending Residues
( green )
  16 - 17
  65 - 86
  112 - 115
  129 - 130
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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