Histidyl-Trna Synthetase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Histidyl-Trna Synthetase
  Conformer 1
(PDB)
1h4v (B)
  Conformer 2
(PDB)
1ady (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 356 1.37   4 - 178   198 - 201   224 - 255   259 - 419
2 44 1.02   179 - 197   202 - 223   256 - 258

Sequence


           ________________________________________________________________________________________________________________________ 
 1h4v(B) : TARAVRGTKDLFGKELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGA------kEMFTFQDRGGRSLTLRPEGTAAMVRAYLEHGMKVWPQPVRLWMAGPMFRAERP----y 
         :                                                                                                                          
 1ady(C) : TARAVRGTKDLFGKELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQDRGGRSLTLRPEGTAAMVRAYLEHGMKVWPQPVRLWMAGPMFRAERPQKGRY 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________________178________________197_201___________________223__________________ 
 1h4v(B) : RQFHQVNYEALGSENPILDAEAVVLLYECLKELGLRRLKVKLSSVGDPEDRARYNAYLREVLSPHREALSEDSKERLEENPMRILDSKSERDQALLKELGVRPMLDFLGEEARAHLKEVE 
         :                                                                                                                          
 1ady(C) : RQFHQVNYEALGSENPILDAEAVVLLYECLKELGLRRLKVKLSSVGDPEDRARYNAYLREVLSPHREALSEDSKERLEENPMRILDSKSERDQALLKELGVRPMLDFLGEEARAHLKEVE 
           ______________________________________________________178________________197_201___________________223__________________ 

           ___________255__________________________________________________________________________________________________________ 
 1h4v(B) : RHLERLSVPYELEPALVRGLDYYVRTAFEVHH------sALGGGGRYDGLSELLGGPRVPGVGFAFGVERVALALEAEGFGLPEEKGPDLYLIPLTEEAVAEAFYLAEALRPRLRAEYAL 
         :                                                                                                                          
 1ady(C) : RHLERLSVPYELEPALVRGLDYYVRTAFEVHHEEIGAQSALGGGGRYDGLSELLGGPRVPGVGFAFGVERVALALEAEGFGLPEEKGPDLYLIPLTEEAVAEAFYLAEALRPRLRAEYAL 
           ___________255__________________________________________________________________________________________________________ 

           ____________________________________________________________                                                             
 1h4v(B) : APRKPAKGLEEALKRGAAFAGFLGEDELRAGEVTLKRLATGEQVRLSREEVPGYLLQALG                                                             
         :                                                                                                                          
 1ady(C) : APRKPAKGLEEALKRGAAFAGFLGEDELRAGEVTLKRLATGEQVRLSREEVPGYLLQALG                                                             
           ____________________________________________________________                                                             

Morph

Morph animation in progress.
Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
14.1
Translation
(A)
-0.9
Closure
(%)
45.7
Bending Residues
( green )
  178 - 179
  197 - 198
  201 - 202
  223 - 224
  255 - 264
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

Download and extract PyMOL PML script file Download