Hla Class I Histocompatibility Antigen

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Hla Class I Histocompatibility Antigen
  Conformer 1
(PDB)
1i4f (A)
  Conformer 2
(PDB)
1qvo (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 185 0.52   3 - 184   211 - 213
2 86 0.72   185 - 210   214 - 273

Sequence


           ________________________________________________________________________________________________________________________ 
 1i4f(A) : GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQRMYGCDVGSDWRFLRGYHQYAYDG 
         :                                                                                                                          
 1qvo(A) : GSHSMRYFYTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDQETRNVKAQSQTDRVDLGTLRGYYNQSEDGSHTIQIMYGCDVGPDGRFLRGYRQDAYDG 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________________________184_______________________210______________________________ 
 1i4f(A) : KDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQLRAYLEGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGT 
         :                                                                                                                          
 1qvo(A) : KDYIALNEDLRSWTAADMAAQITKRKWEAAHAAEQQRAYLEGRCVEWLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGT 
           _____________________________________________________________184_______________________210______________________________ 

           ___________________________________                                                                                      
 1i4f(A) : FQKWAAVVVPSGQEQRYTCHVQHEGLPKPLTLRWE                                                                                      
         :                                                                                                                          
 1qvo(A) : FQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWE                                                                                      
           ___________________________________                                                                                      

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
11.7
Translation
(A)
-0.3
Closure
(%)
90.4
Bending Residues
( green )
  184 - 185
  210 - 211
  213 - 214
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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