Hypothetical Upf0122 Protein Sav1236

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Hypothetical Upf0122 Protein Sav1236
  Conformer 1
(PDB)
1xsv (B)
  Conformer 2
(PDB)
1xsv (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 57 0.54   16 - 28   64 - 108
2 35 0.49   29 - 63

Sequence


           _____________________28________________________________62_______________________________________________                 
 1xsv(B) : DLVKTLRnYLFDFYQSLLTNKQRNYLELFYLEDYSLSEIADTFNVSRQAVYDNIRRTGDLVEDYEKKLELYQKFEQRREIYDEkQHLSNPEQIQRYIQQLEDLE                 
         :                                                                                                                          
 1xsv(A) : DLVKTLRnYLFDFYQSLLTNKQRNYLELFYLEDYSLSEIADTFNVSRQAVYDNIRRTGDLVEDYEKKLELYQKFEQRREIYDEkQHLSNPEQIQRYIQQLEDLE                 
           _____________________28________________________________62_______________________________________________                 

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
20.2
Translation
(A)
0.7
Closure
(%)
65.1
Bending Residues
( green )
  28 - 31
  62 - 66
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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