Hypothetical Transcriptional Regulator In Qaca 5'Region

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Hypothetical Transcriptional Regulator In Qaca 5'Region
  Conformer 1
(PDB)
1jt6 (A)
  Conformer 2
(PDB)
1jt0 (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 97 1.74   66 - 93   115 - 122   124 - 184
2 84 1.54   4 - 65   94 - 114   123 - 123

Sequence


           ______________________________________________________________65_____________________88_______________________114_____12 
 1jt6(A) : NLKDKILGVAKELFIKNGYNATTTGEIVKLSESSKGNLYYHFKTKENLFLEILNIEESKWQEQWKKEQIKAKTNREKFYLYNELSLTTEYYYPLQNAIIEFYTEYYKTNSINEKMNKLEN 
         :                                                                                                                          
 1jt0(D) : NLKDKILGVAKELFIKNGYNATTTGEIVKLSESSKGNLYYHFKTKENLFLEILNIEESKWQEQWKKEQIKAKTNREKFYLYNELSLTTEYYYPLQNAIIEFYTEYYKTNSINEKMNKLEN 
           ______________________________________________________________65_____________________88_______________________114_____12 

           2_________________________________________________________________                                                       
 1jt6(A) : KYIDAYHVIFKEGNLNGEWSINDVNAVSKIAANAVNGIVTFTHEQNINERIKLMNKFSQIFLNGLS                                                       
         :                                                                                                                          
 1jt0(D) : KYIDAYHVIFKEGNLNGEWSINDVNAVSKIAANAVNGIVTFTHEQNINERIKLMNKFSQIFLNGL*                                                       
           2_________________________________________________________________                                                       

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
39.4
Translation
(A)
-0.3
Closure
(%)
62.3
Bending Residues
( green )
  65 - 66
  88 - 94
  114 - 115
  122 - 124
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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