Hypothetical Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Hypothetical Protein
  Conformer 1
(PDB)
2i76 (A)
  Conformer 2
(PDB)
2i76 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 140 0.83   4 - 155
2 95 0.73   156 - 252

Sequence


           ________________________________________________________________________________________________________________________ 
 2i76(A) : VLNFVGTGTLTRFFLECLKiGYILSRSIDRARNLAEVYGGKAATLEKHPEvVFVIVPDRYIKTVANHLNLGDAVLVHCSGFLSSEIFKKSGRASIHPNFSFlEKALEkDQIVFGLEGDER 
         :                                                                                                                          
 2i76(B) : VLNFVGTGTLTRFFLECLKiGYILSRSIDRARNLAEVYGGKAATLEKHPEvVFVIVPDRYIKTVANHLNLGDAVLVHCSGFLSSEIFKKSGRASIHPNFSFlEKALEkDQIVFGLEGDER 
           ________________________________________________________________________________________________________________________ 

           _____________________155________________________________________________________________________________________________ 
 2i76(A) : GLPIVKKIAEEISGKYFVIPSEKKKAYHLAAVIASNFPVALAYLSKRIYTLLGLDEPELLIHTLkGVADNIKKrVECSLTGPVKRGDWQVVEEERREYEKIFGNTVLYDEIVKLLREVAE 
         :                                                                                                                          
 2i76(B) : GLPIVKKIAEEISGKYFVI--eKKKAYHLAAVIASNFPVALAYLSKRIYTLLGLDEPELLIHTLkGVADNIKKrVECSLTGPVKRGDWQVVEEERREYEKIFGNTVLYDEIVKLLREVAE 
           _____________________155________________________________________________________________________________________________ 

           ____                                                                                                                     
 2i76(A) : SERR                                                                                                                     
         :                                                                                                                          
 2i76(B) : S***                                                                                                                     
           ____                                                                                                                     

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
20.1
Translation
(A)
-1.0
Closure
(%)
89.4
Bending Residues
( green )
  155 - 156
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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