Hypothetical Protein Yjhp

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Hypothetical Protein Yjhp
  Conformer 1
(PDB)
1nkv (C)
  Conformer 2
(PDB)
1nkv (A)
  Window Length 11
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 120 1.92   9 - 23   109 - 118   140 - 168   174 - 241
2 105 1.39   24 - 108   123 - 139   169 - 173   242 - 243

Sequence


           ____________________23_______________________________________________________________________________108________________ 
 1nkv(C) : DIPRIFTISESEHRIHNPFTEEKYATLGRVLRkPGTRILDLGSGSGElCTWARDHGITGTGIDsSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEKCDVAACVGATWIAGG----eE 
         :                                                                                                                          
 1nkv(A) : **PRIFTISESEHRIHNPFTEEKYATLGRVLRkPGTRILDLGSGSGElCTWARDHGITGTGIDsSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEKCDVAACVGATWIAGGFAGAEE 
           ____________________23_______________________________________________________________________________108________________ 

           ___________139__________________________168__173_______________________________________________________________241______ 
 1nkv(C) : LLAQSLKPGGIlIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVVEvLADQEGWDRYEAAKWLTrRWLEANPDDDFAAEVRAELNIAPKRYVTYARECFGWGVFALIA 
         :                                                                                                                          
 1nkv(A) : LLAQSLKPGGIlIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVVEvLADQEGWDRYEAAKWLTrRWLEANPDDDFAAEVRAELNIAPKRYVTYARECFGWGVFALIA 
           ___________139__________________________168__173_______________________________________________________________241______ 

           ______                                                                                                                   
 1nkv(C) : RLEHHH                                                                                                                   
         :                                                                                                                          
 1nkv(A) : R*****                                                                                                                   
           ______                                                                                                                   

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
12.1
Translation
(A)
0.2
Closure
(%)
99.4
Bending Residues
( green )
  23 - 24
  108 - 126
  139 - 140
  168 - 169
  173 - 174
  241 - 242
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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