Hypothetical Protein Nmb1012

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Hypothetical Protein Nmb1012
  Conformer 1
(PDB)
2ikb (B)
  Conformer 2
(PDB)
2is5 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 108 0.87   5 - 15   56 - 161
2 35 0.38   16 - 55

Sequence


           _____________15___________________________________54____________________________________________________________________ 
 2ikb(B) : **DKFNQFINRVLSHEGGYANHPKDPGGETNWGITKRTAQANGYNGSrAtREQAISIYRKAFWERYRADQpEAVAFQFFDACVNHGYGNAARlQRAAGVPDDGVIGAVSLKAINSLPEND 
         :                                                                                                                          
 2is5(A) : ASDKFNQFINRVLSHEGGYANHP---gGETNWGITKRTAQANGYNGSrAtREQAISIYRKAFWERYRADQpEAVAFQFFDACVNHGYGNAARlQRAAGVPDDGVIGAVSLKAINSLPEND 
           _____________15___________________________________54____________________________________________________________________ 

           _______________________________________                                                                                  
 2ikb(B) : LLLRFNAERLVFYTKL-------kGWVRRVAQNLIHASA                                                                                  
         :                                                                                                                          
 2is5(A) : LLLRFNAERLVFYTKLGTFTSFGKGWVRRVAQNLIHASA                                                                                  
           _______________________________________                                                                                  

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
12.6
Translation
(A)
-0.3
Closure
(%)
71.5
Bending Residues
( green )
  15 - 18
  54 - 56
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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