IgG1 Fab Fragment (Anti-Lysozyme Antibody D1.3, Kappa) 3 - Lysozyme (E.C.3.2.1.17)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name IgG1 Fab Fragment (Anti-Lysozyme Antibody D1.3, Kappa) 3 - Lysozyme (E.C.3.2.1.17)
  Conformer 1
(PDB) 		1fdl (H)
  Conformer 2
(PDB) 		2dtg (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 114 0.95   3 - 116
2 100 1.18   117 - 216

Sequence


           ___________________________________________________________________________________________________________________116__ 
 1fdl(H) : QVQLKESGPGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTDDTARYYCARER--DYRLDYWGQGTTLTVSSAS 
         :                                                                                                                          
 2dtg(A) : QVQLKESGPGLVAPSQSLSITCTVSGFPLTAYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLQTDDTARYYCARDPYGSKPMDYWGQGTSVTVSSAK 
           ___________________________________________________________________________________________________________________118__ 

           ____________________________________________________________________________________________________                     
 1fdl(H) : TTPPSVFPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPRDC                     
         :                                                                                                                          
 2dtg(A) : TTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRDC                     
           ____________________________________________________________________________________________________                     

Morph
Morph animation in progress.
Status: Initialising

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		39.9
Translation
(A) 		-0.6
Closure
(%) 		97.4
Bending Residues
( green ) 		  116 - 117
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

Download and extract PyMOL PML script file Download