Igm Rf 2A2

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Igm Rf 2A2
  Conformer 1
(PDB) 		1dee (F)
  Conformer 2
(PDB) 		1hez (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 116 0.49   2504 - 2619
2 91 1.59   2620 - 2721

Sequence


           ___________________________________________________________________________________________________________________2619_ 
 1dee(F) : QVQLVESGGGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVS 
         :                                                                                                                          
 1hez(D) : QVQLVESGGGVVQPGRSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVS 
           ____________________________________________________________________________________________________________________119_ 

           ________________________________________________________________________________________________________                 
 1dee(F) : SGSASAPTLFPLVSCENSNPSSTVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGNKEKDVPL*                 
         :                                                                                                                          
 1hez(D) : SGSASAPTLFPLVSCENs----TVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPS-------nEHVVCKVQHPNGNKEKDVPLP                 
           ________________________________________________________________________________________________________                 

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		11.5
Translation
(A) 		0.0
Closure
(%) 		72.3
Bending Residues
( green ) 		  2619 - 2620
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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