Intron 3 (I-Ppo) Encoded Endonuclease

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Intron 3 (I-Ppo) Encoded Endonuclease
  Conformer 1
(PDB)
1a73 (A)
  Conformer 2
(PDB)
1evx (A)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 90 0.43   13 - 32   34 - 86   96 - 112
2 51 0.49   33 - 33   94 - 95   113 - 160

Sequence


           _____________________________32___________________________________________________85________________________112_________ 
 1a73(A) : ALTNAQILAVIDSWEETVGQFPVITHHVPLGGGLQGTLHCYEIPLAAPYGVGFAKNGPTRWQYKRTINQVVHRWGSHTVPFLLEPDNINGKTCTASHLCHNTRCHNPLHLCWESLDDNKG 
         :                                                                                                                          
 1evx(A) : ALTNAQILAVIDSWEETVGQFPVITHHVPLGGGLQGTLHCYEIPLAAPYGVGFAKNGPTRWQYKRTINQVVHRWGSHTVPFLLEPDNINGKTCTASHLCHNTRCHNPLHLCWESLDDNKG 
           _____________________________32___________________________________________________85________________________112_________ 

           __________________________________________                                                                               
 1a73(A) : RNWCPGPNGGCVHAVVCLRQGPLYGPGATVAGPQQRGSHFVV                                                                               
         :                                                                                                                          
 1evx(A) : RNWCPGPNGGCVHAVVCLRQGPLYGPGATVAGPQQRGSHFVV                                                                               
           __________________________________________                                                                               

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
7.1
Translation
(A)
0.1
Closure
(%)
98.0
Bending Residues
( green )
  32 - 34
  85 - 96
  112 - 113
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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