Kaia

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Kaia
  Conformer 1
(PDB)
1r8j (A)
  Conformer 2
(PDB)
1r8j (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 144 0.75   4 - 165
2 115 0.44   166 - 280

Sequence


           ________________________________________________________________________________________________________________________ 
 1r8j(A) : VLSQIAICIWVESTAILQDCQRALSADRYQLQVCESGEMLLEYAQTHRDQIDCLILVAANPSFRAVVQQLCFEGVVVPAIVVGDRDpAKEQLYHSAELHLGIHQLEQLPYQVDAALAEFL 
         :                                                                                                                          
 1r8j(B) : VLSQIAICIWVESTAILQDCQRALSADRYQLQVCESGEMLLEYAQTHRDQIDCLILVAANPSFRAVVQQLCFEGVVVPAIVVG--DpAKEQLYHSAELHLGIHQLEQLPYQVDAALAEFL 
           ________________________________________________________________________________________________________________________ 

           ________________________________165_____________________________________________________________________________________ 
 1r8j(A) : RLAPVETMADHIMLMdPELSSQQRDLAQRLQERLGYLGVYYKRDPDRFLRNLPAYESQKLHQAMQTSYREIVLSYFSPNSNLNQSIDNFVNMAFFADVPVTKVVEIHMELMDEFAKKLRV 
         :                                                                                                                          
 1r8j(B) : RLAPVETMAD------pELSSQQRDLAQRLQERLGYLGVYYKRDPDRFLRNLPAYESQKLHQAMQTSYREIVLSYFSPNSNLNQSIDNFVNMAFFADVPVTKVVEIHMELMDEFAKKLRV 
           ________________________________165_____________________________________________________________________________________ 

           ________________________________                                                                                         
 1r8j(A) : EGRSEDILLDYRLTLIDVIAHLCEMYRRSIPR                                                                                         
         :                                                                                                                          
 1r8j(B) : EGRSEDILLDYRLTLIDVIAHLCEMYRRSIPR                                                                                         
           ________________________________                                                                                         

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
11.2
Translation
(A)
-0.1
Closure
(%)
73.2
Bending Residues
( green )
  165 - 166
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

Download and extract PyMOL PML script file Download