Groel

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Groel
  Conformer 1
(PDB)
1xck (N)
  Conformer 2
(PDB)
1pcq (J)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 325 0.8   4 - 177   180 - 189   373 - 386   397 - 523
2 195 0.77   178 - 179   190 - 372   387 - 396

Sequence


           ________________________________________________________________________________________________________________________ 
 1xck(N) : AAKDVKFGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGID 
         :                                                                                                                          
 1pcq(J) : AAKDVKFGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGID 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________________177_________189____________________________________________________ 
 1xck(N) : KAVTAAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVA 
         :                                                                                                                          
 1pcq(J) : KAVTAAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVA 
           _____________________________________________________177_________189____________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1xck(N) : KAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYD 
         :                                                                                                                          
 1pcq(J) : KAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYD 
           ________________________________________________________________________________________________________________________ 

           ________372___________386_______396_____________________________________________________________________________________ 
 1xck(N) : REKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKLADLRGQNEDQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYNAA 
         :                                                                                                                          
 1pcq(J) : REKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKLADLRGQNEDQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYNAA 
           ________372___________386_______396_____________________________________________________________________________________ 

           ____________________________________________                                                                             
 1xck(N) : TEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMVTDLP                                                                             
         :                                                                                                                          
 1pcq(J) : TEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMVTDLP                                                                             
           ____________________________________________                                                                             

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
10.1
Translation
(A)
0.3
Closure
(%)
95.6
Bending Residues
( green )
  177 - 180
  189 - 190
  372 - 373
  386 - 387
  396 - 397
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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