Lysine-, Arginine-, Ornithine-Binding Protein (Lao)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Lysine-, Arginine-, Ornithine-Binding Protein (Lao)
  Conformer 1
(PDB)
2lao  
  Conformer 2
(PDB)
1lst  
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 134 0.37   3 - 90   191 - 236
2 100 0.64   91 - 190

Sequence


           _______________________________________________________________________________________89_______________________________ 
 2lao    : ALPQTVRIGTDTTYAPFSSKDAKGEFIGFDIDLGNEMCKRMQVKCTWVASDFDALIPSLKAKKIDAIISSLSITDKRQQEIAFSDKLYAADSRLIAAKGSPIQPTLESLKGKHVGVLQGS 
         :                                                                                                                          
 1lst    : ALPQTVRIGTDTTYAPFSSKDAKGEFIGFDIDLGNEMCKRMQVKCTWVASDFDALIPSLKAKKIDAIISSLSITDKRQQEIAFSDKLYAADSRLIAAKGSPIQPTLESLKGKHVGVLQGS 
           _______________________________________________________________________________________89_______________________________ 

           ___________________________________________________________________190________________________________________________   
 2lao    : TQEAYANDNWRTKGVDVVAYANQDLIYSDLTAGRLDAALQDEVAASEGFLKQPAGKEYAFAGPSVKDKKYFGDGTGVGLRKDDTELKAAFDKALTELRQDGTYDKMAKKYFDFNVYGD   
         :                                                                                                                          
 1lst    : TQEAYANDNWRTKGVDVVAYANQDLIYSDLTAGRLDAALQDEVAASEGFLKQPAGKEYAFAGPSVKDKKYFGDGTGVGLRKDDTELKAAFDKALTELRQDGTYDKMAKKYFDFNVYGD   
           ___________________________________________________________________190________________________________________________   

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
51.5
Translation
(A)
0.4
Closure
(%)
98.8
Bending Residues
( green )
  89 - 92
  190 - 193
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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