Lysyl-Trna Synthetase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Lysyl-Trna Synthetase
  Conformer 1
(PDB)
1irx (B)
  Conformer 2
(PDB)
1irx (A)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 408 0.7   6 - 427
2 93 0.45   428 - 520

Sequence


           ________________________________________________________________________________________________________________________ 
 1irx(B) : HWADYIADKIIRERGEKEKYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVPDPWGCHESYAEHFMRKFEEEVEKLGIEV 
         :                                                                                                                          
 1irx(A) : HWADYIADKIIRERGEKEKYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVPDPWGCHESYAEHFMRKFEEEVEKLGIEV 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1irx(B) : DLLYASELYKRGEYSEEIRLAFEKRDKIMEILNKYREIAKQPPLPENWWPAMVYCPEHRREAEIIEWDGGWKVKYKCPEGHEGWVDIRSGNVKLRWRVDWPMRWSHFGVDFEPAGKDHLV 
         :                                                                                                                          
 1irx(A) : DLLYASELYKRGEYSEEIRLAFEKRDKIMEILNKYREIAKQPPLPENWWPAMVYCPEHRREAEIIEWDGGWKVKYKCPEGHEGWVDIRSGNVKLRWRVDWPMRWSHFGVDFEPAGKDHLV 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1irx(B) : AGSSYDTGKEIIKEVYGKEAPLSLMYEFVGIKGQnVILLSDLYEVLEPGLVRFIYARHRPNKEIKIDLGLGILNLYDEFEKVERIYFGVEGdEELRRTYELSMPKKPERLVAQAPFRFLA 
         :                                                                                                                          
 1irx(A) : AGSSYDTGKEIIKEVYGKEAPLSLMYEFVGIKGQnVILLSDLYEVLEPGLVRFIYARHRPNKEIKIDLGLGILNLYDEFEKVERIYFGVEG-eELRRTYELSMPKKPERLVAQAPFRFLA 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________427____________________________________________________________________ 
 1irx(B) : VLVQLPHLTEEDIINVLIKQGHIPRDLSKEDVERVKLRINLARNWVKKYAPEDVKFSILEKPPEVEVSEDVREAMNEVAEWLENHEEFSVEEFNNILFEVAKRRGISSREWFSTLYRLFI 
         :                                                                                                                          
 1irx(A) : VLVQLPHLTEEDIINVLIKQGHIPRDLSKEDVERVKLRINLARNWVKKYAPEDVKFSILEKPPEVEVSEDVREAMNEVAEWLENHEEFSVEEFNNILFEVAKRRGISSREWFSTLYRLFI 
           _________________________________________________427____________________________________________________________________ 

           ____________________________                                                                                             
 1irx(B) : GKERGPRLASFLASLDRSFVIKRLRLEG                                                                                             
         :                                                                                                                          
 1irx(A) : GKERGPRLASFLASLDRSFVIKRLRLEG                                                                                             
           ____________________________                                                                                             

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
8.7
Translation
(A)
-0.1
Closure
(%)
84.4
Bending Residues
( green )
  427 - 430
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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