Major Surface Antigen P30

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Major Surface Antigen P30
  Conformer 1
(PDB)
1kzq (A)
  Conformer 2
(PDB)
1kzq (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 127 0.42   5 - 131
2 122 0.64   132 - 253

Sequence


           ________________________________________________________________________________________________________________________ 
 1kzq(A) : PLVANQVVTCPDKKSTAAVILTPTENHFTLKCPKTALTEPPTLAYSPNRQICPAGTTSSCTSKAVTLSSLIPEAEDSWWTGDSASLDTAGIKLTVPIEKFPVTTQTFVVGCIKGDDAQSC 
         :                                                                                                                          
 1kzq(B) : PLVANQVVTCPDKKSTAAVILTPTENHFTLKCPKTALTEPPTLAYSPNRQICPAGTTSSCTSKAVTLSSLIPEAEDSWWTGDSASLDTAGIKLTVPIEKFPVTTQTFVVGCIKGDDAQSC 
           ________________________________________________________________________________________________________________________ 

           ______131_______________________________________________________________________________________________________________ 
 1kzq(A) : MVTVTVQARASSVVNNVARCSYGADSTLGPVKLSAEGPTTMTLVCGKDGVKVPQDNNQYCSGTTLTGCNEKSFKDILPKLTENPWQGNASSDKGATLTIKKEAFPAESKSVIIGCTGGSP 
         :                                                                                                                          
 1kzq(B) : MVTVTVQARASSVVNNVARCSYGADSTLGPVKLSAEGPTTMTLVCGKDGVKVPQDNNQYCSGTTLTGCNEKSFKDILPKLTENPWQGNASSDKGATLTIKKEAFPAESKSVIIGCTGGSP 
           ______131_______________________________________________________________________________________________________________ 

           _____________                                                                                                            
 1kzq(A) : EKHHCTVKLEFAG                                                                                                            
         :                                                                                                                          
 1kzq(B) : EKHHCTVKLEFAG                                                                                                            
           _____________                                                                                                            

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
37.8
Translation
(A)
-1.1
Closure
(%)
29.7
Bending Residues
( green )
  131 - 133
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download