Malate Oxidoreductase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Malate Oxidoreductase
  Conformer 1
(PDB)
1vl6 (B)
  Conformer 2
(PDB)
1vl6 (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 209 0.5   2 - 157   313 - 348   353 - 374
2 137 1.04   158 - 312   349 - 352

Sequence


           ________________________________________________________________________________________________________________________ 
 1vl6(B) : HVDALEVHRFLKGKIRTALPVEKVDRETLSLLYTPGVADVARACAEDPEKTYVYTSRWNTVAVVSDGSAVLGLGNIGPYGALPVeGKAFLFKAFADIDAFPICLSESEEEKIISIVKSLE 
         :                                                                                                                          
 1vl6(C) : HVDALEVHRFLKGKIRTALPVEKVDRETLSLLYTPGVADVARACAEDPEKTYVYTSRWNTVAVVSDGSAVLGLGNIGPYGALPVeGKAFLFKAFADIDAFPICLSESEEEKIISIVKSLE 
           ________________________________________________________________________________________________________________________ 

           ______________________________154_______________________________________________________________________________________ 
 1vl6(B) : PSFGGINLEDIGAPKCFRILQRLSEEnIPVFHDDQQGTAVVVSAAFLNALKLTEK------vVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERL 
         :                                                                                                                          
 1vl6(C) : PSFGGINLEDIGAPKCFRILQRLSEEnIPVFHDDQQGTAVVVSAAFLNALKLTEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERL 
           ______________________________154_______________________________________________________________________________________ 

           ___________________________________________________________________312_____________________________346___352____________ 
 1vl6(B) : SGDLETALEGADFFIGVSR----kPEW-------vIFALANPVPE----lAREAGAFIVATGRSDHPNQVNNLLAFPGIkGAVEKRSKITKNlLSAVEAIARSCEPEPERIIPEAFDkVH 
         :                                                                                                                          
 1vl6(C) : SGDLETALEGADFFIGVSRGNILKPEWIKKsRKPVIFALANPVPEIDPELAREAGAFIVATGRSDHPNQVNNLLAFPGIkGAVEKRSKITKNlLSAVEAIARSCEPEPERIIPEAFDkVH 
           ___________________________________________________________________312_____________________________346___352____________ 

           ___________                                                                                                              
 1vl6(B) : LNVYTAVKGSA                                                                                                              
         :                                                                                                                          
 1vl6(C) : LNVYTAVKGSA                                                                                                              
           ___________                                                                                                              

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
8.5
Translation
(A)
0.1
Closure
(%)
92.0
Bending Residues
( green )
  154 - 158
  312 - 313
  346 - 349
  352 - 354
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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