Maltose/maltodextrin Transport Atp-Binding Protein Malk

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Maltose/maltodextrin Transport Atp-Binding Protein Malk
  Conformer 1
(PDB)
1q1e (A)
  Conformer 2
(PDB)
2awn (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 191 1.44   32 - 36   160 - 171   189 - 206   208 - 208   214 - 368
2 141 1.67   7 - 31   37 - 159   172 - 188   207 - 207   209 - 213

Sequence


           ____________________________31___36_____________________________________________________________________________________ 
 1q1e(A) : **VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVL 
         :                                                                                                                          
 2awn(C) : ASVQLQNVT-------vSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL-----------------------gVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVL 
           ____________________________31___36_____________________________________________________________________________________ 

           ___________________________________159________170_______________188_______________206____213____________________________ 
 1q1e(A) : QLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSPKMNF 
         :                                                                                                                          
 2awn(C) : QLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSPKMNF 
           ___________________________________159________170_______________188_______________206____213____________________________ 

           ________________________________________________________________________________________________________________________ 
 1q1e(A) : LPVKVTATAIDQVQVELPMPNRQQVWLPVESRDVQVGANMSLGIRPEHLLPSDIADVILEGEVQVVEQLGNETQIHIQIPSIRQNLVYRQNDVVLVEEGATFAIGLPPERCHLFREDGTA 
         :                                                                                                                          
 2awn(C) : LPVKVTATAIDQVQVELPMPNRQQVWLPVESRDVQVGANMSLGIRPEHLLPSDIADVILEGEVQVVEQLGNETQIHIQIPSIRQNLVYRQNDVVLVEEGATFAIGLPPERCHLFREDGTA 
           ________________________________________________________________________________________________________________________ 

           ______________                                                                                                           
 1q1e(A) : CRRLHKEPG*****                                                                                                           
         :                                                                                                                          
 2awn(C) : CRRLHKEPGVASAS                                                                                                           
           ______________                                                                                                           

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
12.2
Translation
(A)
1.2
Closure
(%)
85.8
Bending Residues
( green )
  31 - 32
  36 - 37
  159 - 167
  170 - 172
  188 - 189
  206 - 209
  213 - 214
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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