50S Ribosomal Protein L10

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 50S Ribosomal Protein L10
  Conformer 1
(PDB)
1zav (A)
  Conformer 2
(PDB)
1zax (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 129 0.67   6 - 134
2 41 1.01   135 - 175

Sequence


           ________________________________________________________________________________________________________________________ 
 1zav(A) : VMLTRQQKELIVKEMSEIFKKTSLILFADFLGFTVADLTELRSRLREKYGDGARFRVVKNTLLNLALKNAEYEGYEEFLKGPTAVLYVTEGDPVEAVKIIYNFYKDKKADLSRLKGGFLE 
         :                                                                                                                          
 1zax(A) : ****RQQKELIVKEMSEIFKKTSLILFADFLGFTVADLTELRSRLREKYGDGARFRVVKNTLLNLALKNAEYEGYEEFLKGPTAVLYVTEGDPVEAVKIIYNFYKDKKADLSRLKGGFLE 
           ________________________________________________________________________________________________________________________ 

           _________131______________________________________________                                                               
 1zav(A) : GKKFTAEEVENIAKLPSKEELYAMLVGRVKAPITGLVFALSGILRNLVYVLNAIKEKK                                                               
         :                                                                                                                          
 1zax(A) : GKKFTAEEVENIAKLPSKEELYAMLVGRVKAPITGLVFALSGILRNLVYVLNAIKEKK                                                               
           _________131______________________________________________                                                               

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
43.1
Translation
(A)
-0.7
Closure
(%)
68.2
Bending Residues
( green )
  131 - 137
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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