2-C-Methyl-D-Erythritol 2,4-Cyclodiphosphate Synthase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 2-C-Methyl-D-Erythritol 2,4-Cyclodiphosphate Synthase
  Conformer 1
(PDB)
1u3p (A)
  Conformer 2
(PDB)
1gx1 (C)
  Window Length 15
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 118 0.3   8 - 56   77 - 148
2 20 0.94   57 - 76

Sequence


           _________________________________________________51______________________75_____________________________________________ 
 1u3p(A) : MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDL 
         :                                                                                                                          
 1gx1(C) : ErIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPK-lPHIPQ-rVFIAEDL 
           _________________________________________________51______________________75_____________________________________________ 

           ____________________________________                                                                                     
 1u3p(A) : GCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLI*                                                                                     
         :                                                                                                                          
 1gx1(C) : GCH-dDVNVKATTTEKLGFTGRGEGIACEAVALLIK                                                                                     
           ____________________________________                                                                                     

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
22.5
Translation
(A)
-0.2
Closure
(%)
93.3
Bending Residues
( green )
  51 - 57
  75 - 83
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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