Chitin Oligosaccharide Binding Protein Nagb2

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Chitin Oligosaccharide Binding Protein Nagb2
  Conformer 1
(PDB) 		7eho (A)
  Conformer 2
(PDB) 		7ehq (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 230 0.37   166 - 332   387 - 449
2 171 0.79   49 - 165   333 - 386

Sequence


           ____________________________________________________________________________________________________________________164_ 
 7eho(A) : *DSVSLTLRHINVRDTAKNTLALLEKVVKKTEAEVPGATFKLDGVEDTVNRDVKLKAEMAAGKPPQIFNLFGGADTQNYAKAGHLLPLNDILKELGLEDKFFELREFTVDGKIYGLPEAG 
         :                                                                                                                          
 7ehq(A) : GDSVSLTLRHINVRDTAKNTLALLEKVVKKTEAEVPGATFKLDGVEDTVNRDVKLKAEMAAGKPPQIFNLFGGADTQNYAKAGHLLPLNDILKELGLEDKFFELREFTVDGKIYGLPEAG 
           ____________________________________________________________________________________________________________________164_ 

           ________________________________________________________________________________________________________________________ 
 7eho(A) : FVEGFYYNTKLFADAGITSAPKTWDEFTKALEALKAKNITPIALGGGSGDGWAINMLANSLFVATAGPEAQEGFAKGTTKWTDPAVLDGFKRLKDLKDKGYIDPNVLGLKYSEGQAKFYT 
         :                                                                                                                          
 7ehq(A) : FVEGFYYNTKLFADAGITSAPKTWDEFTKALEALKAKNITPIALGGGSGDGWAINMLANSLFVATAGPEAQEGFAKGTTKWTDPAVLDGFKRLKDLKDKGYIDPNVLGLKYSEGQAKFYT 
           ________________________________________________________________________________________________________________________ 

           _________________________________________329_______________________________________________379__________________________ 
 7eho(A) : GQAAMLFDGSWATSAILDKDKSTVKDNVGYFRFPNIGGKGDNLINGGWSNGYGFSSHLNDAEKKAVKAFIKNFYTLEIQGEALGRDNRVPSMKGVPTPAEAAPLTKAIGEAQASAKAAFP 
         :                                                                                                                          
 7ehq(A) : GQAAMLFDGSWATSAILDKDKSTVKDNVGYFRFPNIGGKGDNLINGGWSNGYGFSSHLNDAEKKAVKAFIKNFYTLEIQGEALGRDNRVPSMKGVPTPAEAAPLTKAIGEAQASAKAAFP 
           _________________________________________329_______________________________________________379__________________________ 

           _______________________________________________                                                                          
 7eho(A) : AFDALVQPKVKVTLEQSVQELLGGQLTPEKLVEKMQKVQDEANAGKL                                                                          
         :                                                                                                                          
 7ehq(A) : AFDALVQPKVKVTLEQSVQELLGGQLTPEKLVEKMQKVQDEANAGK*                                                                          
           _______________________________________________                                                                          

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		56.8
Translation
(A) 		-0.1
Closure
(%) 		95.5
Bending Residues
( green ) 		  164 - 167
  329 - 333
  379 - 392
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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