Glutamate Receptor Delta-2 Subunit

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamate Receptor Delta-2 Subunit
  Conformer 1
(PDB) 		2v3u (A)
  Conformer 2
(PDB) 		8blj (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 140 0.94   5 - 105   218 - 256
2 106 1.68   106 - 214   257 - 258

Sequence


           ______________________________________________________________________________________________________105_______________ 
 2v3u(A) : GGVVLRVVTVLEEPFVMVSENVLGKPKKYQGFSIDVLDALSNYLGFNYEIYVAPDHKYGSPQEDGTWNGLVGELVFKRADIGISALTITPDRENVVDFTTRYMDYSVGVLLRRGTSIQSL 
         :                                                                                                                          
 8blj(A) : **LTLKVVTVLEEPFVMVAENILGQPKRYKGFSIDVLDALAKALGFKYEIYQAPDGRYGHQLHNTSWNGMIGELISKRADLAISAITITPERESVVDFSKRYMDYSVGILIKKGTPIRTF 
           ______________________________________________________________________________________________________539_______________ 

           ___________________________________________________________________________________________214__________________________ 
 2v3u(A) : QDLSKQTDIPYGTVLDSAVYQHVRMKGLNPFERDSMYSQMWRMINRn----NVLESQA-GIQKVKYGNYAFVWDAAVLEYVAINDPDCSFYTVG---aDRGYGIALQHGSPYRDVFSQRI 
         :                                                                                                                          
 8blj(A) : QDLSKQVEMSYGTVRDSAVYEYFRAKGTNPLEQDSTFAELWRTISKNGGADNCVSSPSEGIRKAKKGNYAFLWDVAVVEYAALTDDDCSVTVIGNSISSKGYGIALQHGSPYRDLFSQRI 
           ___________________________________________________________________________________________762__________________________ 

           _____________256___________                                                                                              
 2v3u(A) : LELQQSGDMDILKHKWWPKNG******                                                                                              
         :                                                                                                                          
 8blj(A) : LELQDTGDLDVLKQKWWPHMGRCDLTS                                                                                              
           _____________804___________                                                                                              

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		25.5
Translation
(A) 		-0.2
Closure
(%) 		96.2
Bending Residues
( green ) 		  105 - 106
  214 - 220
  256 - 257
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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