Sugar Abc Transporter, Periplasmic Sugar-Binding Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Sugar Abc Transporter, Periplasmic Sugar-Binding Protein
  Conformer 1
(PDB) 		7c63 (A)
  Conformer 2
(PDB) 		7c68 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 83 1.01   117 - 119   171 - 183   190 - 215   294 - 295   365 - 366   378 - 414
2 166 0.53   5 - 116   297 - 348   367 - 368
3 151 0.67   120 - 170   184 - 189   216 - 293   349 - 364

Sequence


           _________________________________________________________________________________________________________________116____ 
 7c63(A) : **TLEVWIMPNSPQPAEDFKALVAPFEKAHGVEVKVTVLDWGVAWTKITTAATSGVGPDLTQLGTTWVGAISAMGVLEPVDDVLEALGGEKAYLPAVWRTTRLEGARQATAVPWFSELRA 
         :                                                                                                                          
 7c68(A) : QKTLEVWIMPNSPQPAEDFKALVAPFEKAHGVEVKVTVLDWGVAWTKITTAATSGVGPDLTQLGTTWVGAISAMGVLEPVDDVLEALGGEKAYLPAVWRTTRLEGARQATAVPWFSELRA 
           _________________________________________________________________________________________________________________116____ 

           _______________________________________________170__________183___189_______________________215_________________________ 
 7c63(A) : FYYRTDALKAAGVNPAEMFASWQGFEAGLARLKASSFRDPETKAPLAPLCTPGKNSWDVLHNAAPWIWGAGGEIVRQAGGRWQSALNSPESLEGLYFFLSLAQKGYVPAESLEKNTAQIE 
         :                                                                                                                          
 7c68(A) : FYYRTDALKAAGVNPAEMFASWQGFEAGLARLKASSFRDPETKAPLAPLCTPGKNSWDVLHNAAPWIWGAGGEIVRQAGGRWQSALNSPESLEGLYFFLSLAQKGYVPAESLEKNTAQIE 
           _______________________________________________170__________183___189_______________________215_________________________ 

           ___________________________________________________294____________________________________________341___________________ 
 7c63(A) : ADFQAGKCAVFASGPWMIQRAQVPEAKGGFAERTAAKNLGVAPYPAGPKGRYTFFGGSNLALFNFSKNKPLAKELLKYLGGPEAQVRYAQMTGMLPALRSAWSDPSFQQNPLLRTFIQAA 
         :                                                                                                                          
 7c68(A) : ADFQAGKCAVFASGPWMIQRAQVPEAKGGFAERTAAKNLGVAPYPAGPKGRYTFFGGSNLALFNFSKNKPLAKELLKYLGGPEAQVRYAQMTGMLPALRSAWSDPSFQQNPLLRTFIQAA 
           ___________________________________________________294____________________________________________341___________________ 

           ___366____________________________________________________                                                               
 7c63(A) : QFGRTYPSLAGWGGVENLAVQHLGMAWDLVAQGRLTREALKDLMDKASAAINQALRHH                                                               
         :                                                                                                                          
 7c68(A) : QFGRTYPSLAGWGGVENLAVQHLGMAWDLVAQGRLTREALKDLMDKASAAINQALRH*                                                               
           ___366____________________________________________________                                                               

Morph

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Domain Pairs

Fixed Domain Moving Domain Rotation Angle Translation   (A) Closure Bending Residues  
1 2 18.1 -0.8 97.0   116 - 117   294 - 297   366 - 378 Bending Region Analysis
1 3 11.4 0.0 99.5   119 - 120   170 - 171   183 - 184   189 - 190   215 - 216   292 - 295   364 - 365 Bending Region Analysis
2 3 18.8 1.8 98.3   341 - 349 Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 2 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 2

Movement classification: Hinge

PyMOL Script

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