Cytokine Receptor Common Beta Chain

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Cytokine Receptor Common Beta Chain
  Conformer 1
(PDB) 		2gys (B)
  Conformer 2
(PDB) 		2gys (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 192 1.06   99 - 243   251 - 309
2 96 0.5   3 - 98
3 103 0.81   244 - 250   310 - 416

Sequence


           ________________________________________________________________________________________________98______________________ 
 2gys(B) : EETIPLQTLRCYNDYTSHITCRWADTQDAQRLVNVTLIRRVNEDLLEPVSCDLSDDMPWSACPHPRCVPRRCVIPCQSFVVTDVDYFSFQPDRPLGTRLTVTLTQHVQPPEPRDLQISTD 
         :                                                                                                                          
 2gys(A) : EETIPLQTLRCYNDYTSHITCRWADTQDAQRLVNVTLIRRVNEDLLEPVSCDLSDDMPWSACPHPRCVPRRCVIPCQSFVVTDVDYFSFQPDRPLGTRLTVTLTQHVQPPEPRDLQISTD 
           ________________________________________________________________________________________________98______________________ 

           ___________________________________________________________________________________________________________________243__ 
 2gys(B) : QDHFLLTWSVALhWLSPGDLEFEVVYKRLQDSWEDAAILLSNTSQATLGPEHLMPSSTYVARVRTRLAPGSRLSGRPSKWSPEVCWDSQPGDEAQPQNLECFFDGAAVLSCSWEVRKEVA 
         :                                                                                                                          
 2gys(A) : QDHFLLTWSVALhWLSPGDLEFEVVYKRLQDSWEDAAILLSNTSQATLGPEHLMPSSTYVARVRTRLAPGSRLSGRPSKWSPEVCWDSQPGDEAQPQNLECFFDGAAVLSCSWEVRKEVA 
           ___________________________________________________________________________________________________________________243__ 

           __250___________________________________________________309_____________________________________________________________ 
 2gys(B) : SSVSFGLFYKPSPD--rEEECSPVLREGLGSLHTRHHCQIPVPDPATHGQYIVSVQPRRAEKHIKSSVNIQMAPPSLQVTKDGDSYSLRWETMKMRYEHIDHTFEIQYRKDTATWKDSKT 
         :                                                                                                                          
 2gys(A) : SSVSFGLFYKPSaVLLREEECSPVLREGLGSLHTRHHCQIPVPDPATHGQYIVSVQPRRAEKHIKSSVNIQMAPPSLQVT---dSYSLRWET--------dHTFEIQYRKDTATWKDSKT 
           __250___________________________________________________309_____________________________________________________________ 

           ________________________________________________                                                                         
 2gys(B) : ETLQNAHSMALPALEPSTRYWARVRVRTSRTGYNGIWSEWSEARSWDT                                                                         
         :                                                                                                                          
 2gys(A) : ETLQNAHSMALPALEPSTRYWARVRVRTSRTGYNGIWSEWSEARSWDT                                                                         
           ________________________________________________                                                                         

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		13.0
Translation
(A) 		0.4
Closure
(%) 		55.0
Bending Residues
( green ) 		  98 - 99
Bending Region Analysis
Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( yellow ) 		3
Rotation Angle
(deg) 		11.3
Translation
(A) 		-0.1
Closure
(%) 		21.1
Bending Residues
( green ) 		  243 - 244
  250 - 251
  309 - 310
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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