Actin-5c

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Actin-5c
  Conformer 1
(PDB) 		2hf4 (A)
  Conformer 2
(PDB) 		3eks (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 201 0.43   138 - 338
2 156 0.44   6 - 137   339 - 372

Sequence


           ________________________________________________________________________________________________________________________ 
 2hf4(A) : DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR----------kDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 
         :                                                                                                                          
 3eks(A) : DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 
           ________________________________________________________________________________________________________________________ 

           _____________137________________________________________________________________________________________________________ 
 2hf4(A) : IMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTEEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE 
         :                                                                                                                          
 3eks(A) : IMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTEEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE 
           _____________137________________________________________________________________________________________________________ 

           ______________________________________________________________________________________________338_______________________ 
 2hf4(A) : LKDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE 
         :                                                                                                                          
 3eks(A) : LKDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE 
           ______________________________________________________________________________________________338_______________________ 

           ______________                                                                                                           
 2hf4(A) : YDESGPSIVHRKCF                                                                                                           
         :                                                                                                                          
 3eks(A) : YDESGPSIVHRKCF                                                                                                           
           ______________                                                                                                           

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		5.7
Translation
(A) 		0.1
Closure
(%) 		27.4
Bending Residues
( green ) 		  137 - 138
  338 - 339
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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