Actin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Actin
  Conformer 1
(PDB) 		3hbt (A)
  Conformer 2
(PDB) 		3j8i (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 198 1.34   13 - 16   143 - 336
2 157 1.44   7 - 12   17 - 142   337 - 373

Sequence


           __________12__16________________________________________________________________________________________________________ 
 3hbt(A) : ****TTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPR-----------dSYVGDEAQSKRGILTLKYPIE-gIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMT 
         :                                                                                                                          
 3j8i(D) : DEDETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMT 
           __________12__16________________________________________________________________________________________________________ 

           ___________________142__________________________________________________________________________________________________ 
 3hbt(A) : QIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSY 
         :                                                                                                                          
 3j8i(D) : QIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSY 
           ___________________142__________________________________________________________________________________________________ 

           _____________________________________________________________________________________________336________________________ 
 3hbt(A) : ELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQ 
         :                                                                                                                          
 3j8i(D) : ELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQ 
           _____________________________________________________________________________________________336________________________ 

           _______________                                                                                                          
 3hbt(A) : EYDEAGPSIVHRKCF                                                                                                          
         :                                                                                                                          
 3j8i(D) : EYDEAGPSIVHRKCF                                                                                                          
           _______________                                                                                                          

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		17.7
Translation
(A) 		0.3
Closure
(%) 		27.8
Bending Residues
( green ) 		  12 - 13
  16 - 17
  142 - 143
  336 - 337
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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