Phosphoglycerate Kinase 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Phosphoglycerate Kinase 1
  Conformer 1
(PDB) 		5mxm (A)
  Conformer 2
(PDB) 		2p9q (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 217 1.02   4 - 198   393 - 414
2 182 1.3   199 - 392

Sequence


           ________________________________________________________________________________________________________________________ 
 5mxm(A) : *LSNKLTLDKLDVKGKRVVMRVDFNVPMKNNQITNNQRIKAAVPSIKFCLDNGAKSVVLMSHLGRPDGVPMPDKYSLEPVAVELKSLLGKDVLFLKDCVGPEVEKACANPAAGSVILLEN 
         :                                                                                                                          
 2p9q(A) : ALSAKLTLDKVDLKGKRVIMRVDFNVPMKNNQITNNQRIKAAIPSIKHCLDNGAKSVVLMSHLGRPDGIPMPDKYSLEPVADELKSLLNKDVIFLKDCVGPEVEQACANPDNGSIILLEN 
           ________________________________________________________________________________________________________________________ 

           __________________________________________________________________189___________________________________________________ 
 5mxm(A) : LRFHVEEEGKGKDASGNKVKAEPAKIEAFRASLSKLGDVYVNDAFGTAHRAHSSMVGVNLPQKAGGFLIKKELNYFAKALESPERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMA 
         :                                                                                                                          
 2p9q(A) : LRFHVEEEGKGKDSSGKKISADPAKVEAFRASLSKLGDVYVNDAFGTAHRAHSSMVGVNLPQKASGFLMKKELDYFSKALEKPERPFLAILGGAKVKDKIQLIKNMLDKVNFMIIGGGMA 
           __________________________________________________________________189___________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 5mxm(A) : FTFLKVLNNMEIGTSLFDEEGAKIVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGPESSKKYAEAVTRAKQIVWNGPVGVFEWEAFARGTKALMDEVVK 
         :                                                                                                                          
 2p9q(A) : YTFLKELKNMQIGASLFDEEGATIVKEIMEKAEKNGVKIVFPVDFVTGDKFDENAKVGQATIESGIPSGWMGLDCGPESIKINAQIVAQAKLIVWNGPIGVFEWDAFAKGTKALMDEVVK 
           ________________________________________________________________________________________________________________________ 

           _____________________________392________________________                                                                 
 5mxm(A) : ATSRGCITIIGGGDTATCCAKWNTEDKVSHVSTGGGASLELLEGKVLPGVDALSNI                                                                 
         :                                                                                                                          
 2p9q(A) : ATSNGCVTIIGG------------eDKVSHVSTGGGASLELLEGKILPGVEALSNM                                                                 
           _____________________________392________________________                                                                 

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		32.7
Translation
(A) 		-2.0
Closure
(%) 		99.8
Bending Residues
( green ) 		  189 - 202
  392 - 394
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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