Abc Transporter, Substrate Binding Protein (Polyamine)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Abc Transporter, Substrate Binding Protein (Polyamine)
  Conformer 1
(PDB) 		4euo (A)
  Conformer 2
(PDB) 		4eq7 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 154 1.18   26 - 121   247 - 309
2 148 0.81   122 - 246   310 - 334

Sequence


           ________________________________________________________________________________________________121_____________________ 
 4euo(A) : *DLVFSSWGGTTQDAQKAAWAEKFMVETGINVLQDGPTDYGKLKAMVEANGVTWDVVDVEGDYAAQAGPKGLLEKLDFSVIDKTKLDPRFVTDYSVGSFYYSFVIGCNVDSVSACPKSWA 
         :                                                                                                                          
 4eq7(B) : NDLVFSSWGGTTQDAQKAAWAEKF-vETGINVLQDGPTDYGKLKA-vEANGVTWDVVDVEGDYAAQAGPKGLLEKLDFSVIDKTKLDPRFVTDYSVGSFYYSFVIGCNVDSVSACPKSWA 
           ________________________________________________________________________________________________121_____________________ 

           _____________________________________________________________________________________________________246________________ 
 4euo(A) : DLFDTAKFPGKRTFYKWSAPGVIEAALLADGVTADKLYPLDLDRAFKKLDTIKSDIIWWSGGAQSQQLIASAEAPFGSVWNGRMTALEQSGVKVETSWAQNITAADSLVVPKGTKNKDAA 
         :                                                                                                                          
 4eq7(B) : DLFDTAKFPGKRTFYKWSAPGVIEAALLADGVTADKLYPLDLDRAFKKLDTIKSDIIWWSGGAQSQQLIASAEAPFGSVWNGR-tALEQSGVKVETSWAQNITAADSLVVPKGTKNKDAA 
           _____________________________________________________________________________________________________246________________ 

           ________________________________297_____________________________________________                                         
 4euo(A) : MKFIALATSAQAQADMATATGYAPVNIESAKLMDPKIAKSLPDQQTESQVNADMNYWAQHRDEIGERWYAWQAK******                                         
         :                                                                                                                          
 4eq7(B) : -kFIALATSAQAQAD-aTATGYAPVNIESAKL-dPKIAKSLPDQQTESQVNAD-nYWAQHRDEIGERWYAWQAKHHHHHH                                         
           ________________________________297_____________________________________________                                         

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		19.3
Translation
(A) 		0.4
Closure
(%) 		41.8
Bending Residues
( green ) 		  121 - 124
  246 - 247
  297 - 311
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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