Acetaldehyde Dehydrogenase (Acylating)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Acetaldehyde Dehydrogenase (Acylating)
  Conformer 1
(PDB)
1nvm (F)
  Conformer 2
(PDB)
1nvm (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 175 1.08   83 - 84   86 - 87   103 - 111   113 - 117   128 - 279   289 - 293
2 130 0.85   6 - 82   85 - 85   88 - 102   112 - 112   118 - 127   280 - 288   294 - 310

Sequence


           ____________________________________________________________________________78_____________________102____________117___ 
 1nvm(F) : ***KLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSASAHVQNEALLRQAKPGIRLIDLTPAAIGPYCVPVVNLEE 
         :                                                                                                                          
 1nvm(B) : MNQKLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSASAHVQNEALLRQAKPGIRLIDLTPAAIGPYCVPVVNLEE 
           ____________________________________________________________________________78_____________________102____________117___ 

           ____127_________________________________________________________________________________________________________________ 
 1nvm(F) : HLGKLNVNMVTCGGQATIPMVAAVSRVAKVHYAEIVASISSKSAGPGTRANIDEFTETTSKAIEVIGGAAKGKAIIIMNPAEPPLIMRDTVYVLSAAADQAAVAASVAEMVQAVQAYVPG 
         :                                                                                                                          
 1nvm(B) : HLGKLNVNMVTCGGQATIPMVAAVSRVAKVHYAEIVASISSKSAGPGTRANIDEFTETTSKAIEVIGGAAKGKAIIIMNPAEPPLIMRDTVYVLSAAADQAAVAASVAEMVQAVQAYVPG 
           ____127_________________________________________________________________________________________________________________ 

           ____________________________________279______288________________________                                                 
 1nvm(F) : YRLKQQVQFDVIPESAPLNIPGLGRFSGLKTSVFLEVEGAAHYLPAYAGNLDIMTSAALATAERMAQSMLNA                                                 
         :                                                                                                                          
 1nvm(B) : YRLKQQVQFDVIPESAPLNIPGLGRFSGLKTSVFLEVEGAAHYLPAYAGNLDIMTSAALATAERMAQSMLNA                                                 
           ____________________________________279______288________________________                                                 

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
12.6
Translation
(A)
-0.2
Closure
(%)
99.9
Bending Residues
( green )
  78 - 88
  102 - 103
  105 - 113
  117 - 118
  127 - 128
  279 - 280
  288 - 289
  291 - 294
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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