Protein Rdmb

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Protein Rdmb
  Conformer 1
(PDB) 		1qzz (A)
  Conformer 2
(PDB) 		7owb (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 165 2.28   163 - 213   215 - 297   314 - 354
2 159 1.76   18 - 162   214 - 214   298 - 313

Sequence


           ________________________________________________________________________________________________________________________ 
 1qzz(A) : LEPTDQDLDVL--LKNLGNLVTPMALRVAATLRLVDHLLAGADTLAGLADRTDTHPQALSRLVRHLTVVGVLEGGEKgRPLRPTRLGMLLADGHPAQQRAWLDLNGAVSHADLAFTGLLD 
         :                                                                                                                          
 7owb(A) : ******QIDALRTLIRLGSLHTPMVVRTAATLRLVDHILAGARTVKALAARTDTRPEALLRLIRHLVAIGLLEEDAPGE-FVPTEVGELLADDHPAAQRAWHDLTQAVARADISFTRLPD 
           ________________________________________________________________________________________________________________________ 

           _______________________________162________________________________________________213___________________________________ 
 1qzz(A) : VVRTGRPAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVT 
         :                                                                                                                          
 7owb(A) : AIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRK 
           _______________________________159________________________________________________210___________________________________ 

           ____________________________________287___________________313____________________________________________                
 1qzz(A) : ADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRa---DRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFTAVS                
         :                                                                                                                          
 7owb(A) : ADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERAEtADLHFS-LLDLRMLVFLGGALRTREKWDGLAASAGLVVEEVR---QLtIPYDLSLLVLAPA*                
           ____________________________________284___________________313____________________________________________                

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		21.7
Translation
(A) 		0.1
Closure
(%) 		79.3
Bending Residues
( green ) 		  162 - 167
  213 - 215
  287 - 301
  313 - 314
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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